22 October-2 November 2018
Stazione Zoologica Anton Dohrn Naples, Italy

For many zooplanktonic species, the taxonomic status is still unresolved because the descriptions are insufficient for the complexity of morphological characters. Moreover, many cryptic or sibling species have been recently detected with molecular analyses. Only the integration of morphological and molecular approaches, coupled with phylogenetic analyses, will allow us to resolve the taxonomic problems that still hinder our clear comprehension of species distribution and evolution.

The Marine Organism Taxonomy Service at the Stazione Zoologica Anton Dohrn of Naples has launched a series of Advanced Zooplankton Courses (AZC) to provide an advanced training on integrative morphological and molecular taxonomy of marine zooplankton.

AZC1 will be focused on copepods and will improve and update the expertise in species identification of selected families: Aetideidae, Paracalanidae, Spinocalanidae, Corycaeidae, Oithonidae, and Oncaeidae, which are diverse, common and abundant in epipelagic and/or mesopelagic oceanic waters.

The course will also provide an opportunity to interact and discuss with specialized experts on new challenges of marine copepods taxonomy in the molecular era.

AZC1 is open to 20 participants with documented experience in copepod identification.

Registration fee: 600 €

EMBRC supports AZC1 with funds to cover the fee for three participants.

First Announcement

For more information

INBALANCE - INvertebrate-BActeriaL Associations as hotspots of benthic Nitrogen Cycling in Estuarine ecosystems

While traditionally, bacteria have been considered driving much of the Earth’s nitrogen (N) cycle, recent research shows that ecological interactions between meio-, macrofauna and bacteria are important in regulating N cycling in soft sediments. Thus, the INBALANCE Project aims to unveil the quantitative importance of ecological interactions between microorganisms and their benthic invertebrate hosts in regulating N cycling in shallow estuarine sediments. In particular, this project will investigate the identity and activity of bacteria associated with benthic invertebrate hosts, the most abundant functional group of meio- and macrofauna in estuarine systems, across the full range of possible interactions, from strict symbioses to casual associations.

Partners

Klaipeda University, Lithuania; Stockholm University, Sweden; Cawthron Institute, New Zealand; Università degli Studi di Parma, Italy; Stazione Zoologica Anton Dohrn, Italy.

Project Lifetime

2018 – 2021

SZN Role

Partner

SZN Principal Investigator

Ulisse Cardini

Project Coordinator

Mindaugas Zilius (Klaipeda University, Lithuania)

Funding Body

Research Council of Lithuania (LMT) under the European Social Funds (ESF) programme

An holistic understanding of seagrass functioning and resilience to local-scale disturbances: from molecular to biogeographical scales

Summary

The physiological and ecological performance of ‘ecosystem engineers’ (e.g. seagrasses, kelps, corals) change from local to biogeographical scales, in response to contemporary and past processes. Understanding the resilience of ‘ecosystem engineers’ is particularly essential, because the type and number of human-induced disturbances has dramatically increased and global climate change is concurrently imposing high stress levels. The elements that contribute to the resilience of ‘ecosystem engineers’ are majorly unknown, and, therefore, represent a major challenge for modern ecology. The purpose of this proposal is to empirically assess whether genetic diversity, physiological versatility and ecological stability and resilience of an ‘ecosystem engineer’ (here, the seagrass Cymodocea nodosa) are connected from local to biogeographical scales. The implications of this proposal are relevant from a conservation perspective; if this study demonstrates that the resilience of species changes across the species’ distribution range, then conservation policies should be adapted to different regions according to the species capacity to overcome disturbances.

SZN role

Participant Institution involved in the genetic characterization of Cymodocea nodosa populations, and in the assessment of gene expression in controlled conditions.

Principal Investigator

Gabriele Procaccini

Project coordinator

Fernando Tuya Cortés (Universidad De Las Palmas De Gran Canaria)

Project lifetime

2016-2018

Funding Institution

Ministerio de Economia y Competitividad - Spain

Partners

Universidad De Las Palmas De Gran Canaria, Spain; Universidad De Las Islas Baleares, Spain; Stazione Zoologica Anton Dohrn, Italy

ABBaCo - Restauro Ambientale e Balneabilità del SIN Bagnoli-Coroglio

Approccio ecosistemico alla pesca ed acquacoltura sostenibile

COCONET - Towards COast to COast NETworks of marine protected areas (from the shore to the high and deep sea), coupled with sea-based wind energy potential

DiaEdit

EMBRIC - European Marine Biological Research Infrastructure Cluster

HEATGRASS - Tolerance to HEAT stress induced by climate change in the seaGRASS Posidonia oceanica

RECCAM - Seagrass Meadows resilience to global warming: an analysis based on responses at ecophysiological, population and ecosystem levels

Restauro Ambientale e Balneabilità del SIN Bagnoli-Coroglio

Summary

Dismissed industrial activities are responsible for persistent environmental degradation, mainly due to long-term accumulation of xenobitic contaminants in the environment. Such a chronic form of pollution represents a major threat for human health, biodiversity and ecosystem functioning. Necessary environmental remediation practices should however be coupled to restoration plans aiming at revert the degradation trend and give back healthy areas able to provide valuable ecosystem goods and services. Albeit fully integrated into the EU Restoration Agenda, marine environmental restoration is a new challenging issue in ecology, with Italy coordinating MERCES, the first European project in this field. The environmental restoration of Bagnoli-Coroglio Bay is a unique challenge at European level. ABBACO will develop new approaches for the removal and remediation of contaminated sediments and restoration of marine habitats. Actions include: i) identifying the environmental benchmark of the area; ii) assessing its present health status, iii) studying the effects of contaminated sediments on biodiversity and ecosystem functioning (MSFD), iv) assessing the combined effects of multiple stress at a hierarchical level; (v) experimenting innovative methods of transplantation and restoration of key species and habitats, and new biotechnological instruments for the remediation of sediments (bioremediation, bioaugmentation) in degraded habitats. ABBACO will provide novel expertise and stimulate new initiatives within the Blue Economy Agenda. The project results will be achieved by the actions of 6 intermingled work packages (WPs): WP1 Historic overview of the environmental status; WP2 Assessment of contamination and multiple environmental impact; WP3 Effects on biodiversity and ecosystem functioning; WP4 Holistic approach to the study of multiple stress and risk reduction; WP5 Pilot studies of restoration and rehabilitation; WP6 Evaluating the effects of restoration and rehabilitation procedures; WP0 Project management

What we do

We are coordinator of the project and play a key role in each of the 6 project’s WPs.

Partners

1) Stazione Zoologica Anton Dohrn, Napoli; 2) Istituto Superiore di Sanità (ISS); 3) Istituto Nazionale di Geofisica e Vulcanologia (INGV); 4-5) Consiglio Nazionale delle Ricerche (CNR-ISAC, CNR IAMC); 6) Agenzia Nazionale per le Nuove Tecnologie, l'Energia e lo Sviluppo Economico Sostenibile (ENEA); 7) Università Politecnica delle Marche; 8-9) Università degli Studi di Napoli Federico II (DiB, DICEA); 10) Università degli Studi della Campania “Luigi Vanvitelli”; 11) Università degli Studi di Napoli “Parthenope; 12) Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)

Research Area

Multidisciplinary Science

Project Lifetime

8th March 2017 to 7th March 2020

SZN Role

Coordinator

Principal Investigators

Luigi Musco, Vincenzo Saggiomo

Co-Principal Investigator

Lucia Rizzo

SZN people involved

Researchers: Bertocci I (WP4 co-leader), Bottaro M, Cardini U, Carotenuto Y, Castellano I, Costantini M, Crocetta F, D'Ambra I, Ferrante M, Hochscheid S, Locascio A, Marin Guirao L, Munari M, Pepi M, Rastelli E, Ristoratore F, Sansone C, Stefanni S, Zupo V
Experienced Researchers: Brunet C, Buia MC, Casotti R, Gambi MC, Iudicone D, Mazzocchi MG, Montresor M, Procaccini G (WP5 leader), Romano G, Sordino P, Spagnuolo A, Tosti E (WP4 co-leader)
Senior Researchers: Palumbo A, Ribera D’Alcalà M, Santella L, Zingone A (WP3 co-leader)
Associate Researchers: Badalamenti F, Vicinanza D, Vega Fernàndez T (WP1 leader)
Technologists: Conversano F, Margiotta F (WP3 co-leader), Patti FP, Sarno D, Terlizzi F, Toscano A, Saggiomo M
Experienced Technologists: Cirino P
Technicians: Cannavacciuolo M, Di Capua I, Lanzotti G, Passarelli A, Zazo G
Post doc: Gallo A, Guglielmo S, Morroni L (many others to be involved soon)
PhD Students: Dell’Anno F

Funding Institution

MIUR - Fondo Integrativo Speciale per la Ricerca (determina CIPE - GU n.56 8.3.2017)
Contribution to SZN: €2,000,000 (MIUR contribution) plus €1,700,000 (SZN co-financing contribution)

Newsletter N. 2

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Animal evolution from a cell type perspective: multidisciplinary training in single-cell genomics, evo-devo and in science outreach

Summary

The aim of EvoCELL is to lay the foundation for a new branch of evo-devo focussing on cell types. We will study fundamental questions in animal evolution and development - eg. how new cell types arise in evolution, how many are in common between different animal groups and how many unique cell types have evolved in different animal lineages- using a new technology, single cell sequencing, which we will for the first time employ outside of lab models to sample the great diversity of animal phyla. EvoCELL will train a new generation of multidisciplinary scientists skilled in exploring the vast breadth of animal differentiation. We will jointly sample data from all major animal lineages, richly represented in the biodiversity of European waters, and develop new tools for comparative analyses, through which we will together pioneer three branches of cell evo-devo: evolution of stem cells; emergence of animal life cycles, and the stunning diversity of neural cell types. Through their excellent interdisciplinary and intersectoral training, from single-cell biology and palaeontology to bioinformatics and public outreach, our graduates will be in prime positions to assume leadership roles in academia, industry, and science outreach.

What we do

We are one of ten partners and are contributing to the diversity and evolution of neuronal cell types.

Partners

European Molecular Biology Laboratory, Heidelberg - DE; Stazione Zoologica Anton Dohrn, Napoli – IT; Uppsala University, Uppsala – SE; University of Heidelberg, Heidelberg – DE; University of Exeter, Exeter - UK; University College London, London – UK; Sars International Center for Marine Molecular Biology, Bergen – NO; Centre National de la Recherche Scientifique, Villefranches sur mer, Lion - FR; Non-academic partners: Museum für Naturkunde, Berlin – DE; Genomix4Life, Salerno - IT

Research Area

Organismal Biology

Project Lifetime

January 2018 to December 2022

SZN Role

Partner

Principal Investigator

Maria I. Arnone

People involved

2 ESRs to be hired

Funding Institution

European Commission, Horizon 2020 Call for Proposal: H2020-MSCA-ITN-2017. Grant Agrement no. 766053.

Contribution to SZN

€344081,76 (EU contribution)

Dedicated website

https://www.evocell-itn.eu/

Media - Pictures

Meet the team

Maria I. Arnone, Researcher
Periklis Paganos, PhD student

Summary

ASSEMBLE Plus is a consortium of marine biological research stations in 16 countries, operating under the umbrella of the European Marine Biological Resource Centre (EMBRC-ERIC). The consortium provides scientists from academia, industry and government with transnational access to its marine biological research facilities, its historical data, and to advanced training opportunities, ASSEMBLE Plus aims to stimulate fundamental and applied research excellence in marine biology and ecology in Europe.

What we do

The 39 partner stations in the consortium provide access to a wide range of marine ecosystems, including the Red Sea, the Caribbean and Svalbard. We aim at attracting not only marine biological projects but also ones from non-marine sciences and from the private sector. We further aim to improve service provision by developing novel technologies and data solutions. Access to our stations is Trans-National, meaning that you can access ASSEMBLE Plus stations in any partner country other than the country in which you are employed.
If you wish to make use of this access program, you need to submit a short research proposal, and if this is selected, you will be able to carry out your proposed research at a marine partner station of your choice. The expenses of your stay as well as your travel costs will be covered, within certain limits, by ASSEMBLE Plus. If you are employed outside the EU, you can make use of the access program as well, but some restrictions apply.
For more information on ASSEMBLE Plus, including information on calls for proposals, rules, application- and access procedures, and submission deadlines, see http://www.assembleplus.eu. For any specific questions, contact Access Officer Florence Guillot; Email: access (at) embrc.eu

Partners

ASSEMBLE Plus Access Providers in the European Marine Biological Resource Centre (EMBRC-ERIC) are:
• EMBRC-Belgium (VLIZ, UGENT),
• EMBRC-France (Sorbonne Universités, CNRS),
• EMBRC-Greece (HCMR),
• EMBRC-Israel (HUJI),
• EMBRC-Italy (SZN, CNR),
• EMBRC-Norway (UiB),
• EMBRC-Portugal (CCMAR, IMAR, CIIMAR),
• EMBRC-Spain (UPV/EHU, UVIGO),
• EMBRC-UK (SAMS, USTAN, MBA, NERC-BAS, MSS),

ASSEMBLE Plus Access Providers not currently member of EMBRC-ERIC:
• Finland (UH),
• Germany (AWI, MPIMM),
• Ireland (NUIG),
• The Netherlands (NIOZ),
• Poland (IOPAN, UG-Gdansk),
• Slovenia (NIB),
• Sweden (UGOT – SLC).

Detailed information on the Access Providers is available on the ASSEMBLE Plus website at http://www.assembleplus.eu/

This distributed partnership provides access to diverse marine ecosystems and their biodiversity of the European coastal seas, the Red Sea (HUJI), the Caribbean (NIOZ), the Arctic (IOPAN) and the Antarctic (NERC-BAS).

Research Area

Research Infrastructure

Project Lifetime

48 months as of 1 October 2017

SZN Role

The SZN lead the Work Package “NA1 Improving Transnational Access (TA) provision”, coordinating the input from UPMC, UGOT, UPV/EHU, CCMAR, VLIZ, MSS.
The main objectives are:
• Establish a policy for regulating, granting and supporting TA;
• Set up single-access point for TA to the offered infrastructure;
• Test TA-pipelines through ASSEMBLE Plus and cognates in joint calls;
• Share best practices among platforms and services;
• Improve the efficiency of TA service provision.

SZN is involved as partner in three Joint Research Activities (JRAs).
JRA1 Genomics observatories
JRA3 Functional genomics
JRA4 Development of instrumentation

TA: In Italy, the SZN coordinates the transnational access to SZN in Naples and Ischia and to its Third Parties ISMAR-CNR in Venice http://www.ismar.cnr.it and IAMC-CNR in Messina http://www.iamc.cnr.it/index.php/contattaci/). All give access to Mediterranean pelagic and benthic hard- and soft bottom ecosystems.

SZN includes the main building in the Villa Comunale in Naples, the benthic ecology laboratory at Ischia Porto and the turtle research centre at Portici. Visitors have access to service platforms and research laboratories. SZN does not operate a guesthouse given ample supply of hotels and B&Bs nearby. SZN has extensive experience with collecting and maintaining model species and performing multi- disciplinary research on these organisms http://www.szn.it/index.php/en/research

Principal Investigator

Wiebe H.C.F. Kooistra

Funding Institution

Université Sorbonne coordinates the project.

Contribution to SZN

€ 1.017.745,25 of which € 289.702,00 to the Third Parties

Dedicated website

http://www.assembleplus.eu/

Coordinated Research Infrastructures Building Enduring Life-science Services

Summary

CORBEL is an initiative of thirteen new biological and medical research infrastructures (BMS RIs), which together will create a platform for harmonised user access to biological and medical technologies, biological samples and data services required by cutting-edge biomedical research. CORBEL will boost the efficiency, productivity and impact of European biomedical research. Individually, the services offered by the BMS RIs are critical to their own user communities. Collectively, through CORBEL, they will be transformative across the range of life-science disciplines: from generation of knowledge at the bench to patient treatment at the bedside.

What we do

The SZN participate to the WP4 (Community Driven Cross-Infrastructure joint research – Bioscience): Use case 4 (Marine Metazoan Developmental Models for BioMedical research - from predictive integrated databases to functional testing), coordinated by CNRS-Villefrances-sur-Mer (Evelyn Houliston). Within this WP the SZN hired for 18 mo the bioinformatician postdoc Elijah K. Lowe to work at enabling genomics and databases for Paracentrotus lividus.

Partners

Altogether, the CORBEL consortium comprises 37 individual partner institutions from 13 ESFRI Biological and Medical Sciences Research Infrastructures (BMS RI). Partners within WP4 are: EMBL-HD, EMBL-EBI, UMCU, ICFO, CRG, BRFAA, HMGU, CIRMMP, CSIC, CNRS, SZN, USTAN, FVB, MDC, VU/VUmc, DKFZ.

Research Area

Research Infrastructure

Project Lifetime

September 2015 to August 2019

SZN Role

Partner

Principal Investigator

Maria I. Arnone

People involved

Elijah K. Lowe - Salvatore D’Aniello - Anna Palumbo - Filomena Ristoratore

Funding Institution

European Commission Horizon 2020 research and innovation programme. Grant agreement No 654248.

Contribution to SZN

€90.700,00. (EU contribution)

Dedicated website

http://www.corbel-project.eu/home.html

Media - Pictures

Corbel Twitter

Corbel You tube channel