Reference: Remo Sanges

Laboratory equipped for studies of computational genomics throughout bioinformatics approaches.

Systems for experimentation

Databases, high throughput functional genomics.

Analysis

Computational approaches, bioinformatics, comparative genomics, data-mining (genomics and transcriptomics in marine organisms).

Strumentazioni

• Personal computers.
• Workstations and servers.

The Ischia Marine Center (IMC) is an interdepartmental center located on the Island of Ischia., The research focus of the IMC is on vulnerability assessment of marine coastal ecosystems and organisms through an integrated approach, highlighting the interactions between anthropogenic activities and climate change, with applications to environmental protection, outreach, and restoration actions. The aim of IMC research activities is to facilitate cooperative research between internal and external researchers, interdisciplinary collaborations, and interactions with public and private stakeholders.

IMC main lines of research include:

1) Benthos ecology: the study of the effects of global changes on biodiversity, plant-animal interaction, and the microbiome associated with marine species.
2) Ecophysiology and biotechnology: the morpho-functional study of coastal communities associated with seagrasses and chemical ecology, also through cultivationof model organisms and research of new biotechnologies.
3) Fisheries oceanography: the study of fish eggs and larvae to understand the variations in abundance and distribution of fish populations related to regional oceanographic factors and global change in climate.
4) Taxonomy of marine organisms: the Marine Organisms Taxonomy Unit (MOTax) at the IMC focuses on the analysis of the benthic communities (sorting, LPT identification, analysis of ecological data).

The IMC is organized into three structures with two functional areas:

Villa Dohrn, historical site, built in 1906 as the private residence of the Dohrn family. In 1969 the building became the Benthos Ecology Laboratory. Villa Dohrn is currently undergoing a major renovation and repurposing project, to become the new "Research Center for Adaptation of Marine Ecosystems to Climate Change".

MEDAS Center (Marine Ecological Data Analysis and Synthesis), with the aim of analyzing existing information to address the pressing questions and needs, including economic ones, in the context of Blue Growth. At the momentMEDAS is the operational headquarters of the IMC and the Ecology Functional Area of the Benthos/Nekton for the entire EMI Department of the SZN.

Diving Centre, that oversees scientific diving to support research activities at sea, with Functional Area Diving Center Ischia, located near the mooring of the SZN vessel Beagle Junior, operated by the IMC.

Coordinator Maria Cristina Vigo Majello This email address is being protected from spambots. You need JavaScript enabled to view it. +39 338 4926845 +39 081 5833401

Personnel

Coordinator
Maria Cristina Vigo Majello

Administration
Messina Rosanna
Patti Francesco

Senior Researcher
Ciannelli Lorenzo
Teixidó Núria
Zupo Valerio

Researcher
Mazzella Valerio

Technologist
Lorenti Maurizio

Technician
Chiarore Antonia
Guglielmo Rosanna
Iacono Bruno
Mirasole Alice
Rando Vincenzo

Scholarship
Italiano Anna

PhD student
Liguori Gianluca
Nannini Matteo
Somma Emanuele

Reference: Maria Costantini

The Laboratory of Marine Genomics and Epigenetics is aimed at developing novel approaches for the study of genomes of marine organisms by applying multidisciplinaty approaches.

It encompasses approaches for the study of epigenetic modifications to study the evolution of diversity and adaptative capabilities of organisms.

The Lab includes areas equipped for molecular biology and genomic and proteomic analysis.

Systems for experimentation

• Facilities for molecular analysis applied to the study of genomes of marine organisms.
• Systems for the morpho-functional characterization and genome analysis.

Analysis

• Genomic approaches to study genome organization in marine organisms.
• Transcriptomics.
• Genomic analysis of the functioning of marine organisms and systems.
• Gene expression (Real Time qPCR, Western Blot).
• Proteomic approaches to study epigenetic modifications (metilation, de-metilation, acetylation, histone and chromatine modifications, etc.).
• Proteomic approaches (antibodies) to identify epigenetic modifications induced by evolution and interaction of organisms with the environment.

Equipments

• Electrophoresis, DNA and proteins.
• PCRs including gradient.
• Scanners for micro-arrays and gene expression.

The  staff of Villa Dohrn-Benthic ecology is carrying on long-term research in some sites around the Island of Ischia, which represent pilot stations for continuous and multifacets monitoring of species, communities and ecosystems which have some uniqueness or high ecological importance since include species and habitat protected in the frame of  the European Community legislation.

Posidonia oceanica systems off  Lacco Ameno and Castello Aragonese

These are two seagrass meadows around the Island of Ischia of the higher plant species Posidonia oceanica, which is protected by the European legislation and it is considered one of the reference habitat  for the evaluation of the water quality and ecosystem health in the frame of the Marine Strategy. Both Posidonia meadows have been included in the network of the marine sites of the LTER-Italy ("Italian  long-term ecological research network"), and have been studied for various ecological aspects since many years from the staff of Villa Dohrn. Additional details about these two sites and about the LTER-Italy project are available on the specific item (LTER-Italy) of this web site, as well as at: http://www.lteritalia.it

Volcanic CO₂ vents of the Castello Aragonese and other sites around the Island of Ischia

These pilot stations represent unique sites where gaseous CO₂, from volcanic origin, is bubbling under water, at ambient temperature and salinity, thus provoking only a natural acidification of the surroundings sea-waters. Around the waters of the Castello Aragonese of Ischia, in particular, the bubbling is creating a gradient of pH-pCO₂ concentration and acidification affecting mainly the shallow rocky vegetated reef and a nearby shallow Posidonia oceanica system. In the other sites around Ischia, located not far from the Castello vent’s system, the bubbling and local acidification is affecting some of the most typical habitat of the Mediterranean, such as semi-obscure cave habitat, coralligenous outcrops, deeper rocky reefs and Posidonia meadows, as well as sandy and detritic bottoms. As a whole, these sites allow to study in real time the effects of ocean acidification, in relation to the near-future scenarios of climate change, and are utilized by the staff and various collaborators/guests as natural laboratories to perform in situ observation and experiments.

Research project ended in 2014-2015

• ASSEMBLE
• COST-Action Seagrass Productivity ES0906
• Tropical signals (CIESM)

Research project in progress:

• MIUR Project Bandiera RITMARE (2012-2015)
• VulnerClima (Ritmare-Cofund Bandiera)
• "Windows on the future ocean" (National Geographic, USA)
• NEMO (NExt generation Marine Observatories) (Premiali MIUR)
• Premiali ACIDIT
• FP7 - Perseus (Policy-oriented marine environmental research in the southern european seas)
• LTER-Italia
• LifeWatch MedPan
• PTSZN(2013-2015)- Program 4. Environmental variability, climate change and anthropogenic impacts: adaptive responses in species, communities and benthic systems.